Index

_

__init__() (moosefs.core.data_processor.DataProcessor method) (moosefs.core.feature.Feature method) (moosefs.core.novovicova.StabilityNovovicova method) (moosefs.core.pareto.ParetoAnalysis method) (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) (moosefs.feature_selectors.base_selector.FeatureSelector method) (moosefs.feature_selectors.elastic_net_selector.ElasticNetSelector method) (moosefs.feature_selectors.f_statistic_selector.FStatisticSelector method) (moosefs.feature_selectors.lasso_selector.LassoSelector method) (moosefs.feature_selectors.mrmr_selector.MRMRSelector method) (moosefs.feature_selectors.mutual_info_selector.MutualInfoSelector method) (moosefs.feature_selectors.random_forest_selector.RandomForestSelector method) (moosefs.feature_selectors.svm_selector.SVMSelector method) (moosefs.feature_selectors.variance_selectors.VarianceSelector method) (moosefs.feature_selectors.xgboost_selector.XGBoostSelector method) (moosefs.merging_strategies.arithmetic_mean_merger.ArithmeticMeanMerger method) (moosefs.merging_strategies.base_merger.MergingStrategy method) (moosefs.merging_strategies.borda_merger.BordaMerger method) (moosefs.merging_strategies.consensus_merger.ConsensusMerger method) (moosefs.merging_strategies.l2_norm_merger.L2NormMerger method) (moosefs.merging_strategies.union_of_intersections_merger.UnionOfIntersectionsMerger method) (moosefs.metrics.performance_metrics.Accuracy method) (moosefs.metrics.performance_metrics.BaseMetric method) (moosefs.metrics.performance_metrics.ClassificationMetric method) (moosefs.metrics.performance_metrics.F1Score method) (moosefs.metrics.performance_metrics.LogLoss method) (moosefs.metrics.performance_metrics.MeanAbsoluteError method) (moosefs.metrics.performance_metrics.MeanSquaredError method) (moosefs.metrics.performance_metrics.PrecisionScore method) (moosefs.metrics.performance_metrics.R2Score method) (moosefs.metrics.performance_metrics.RecallScore method) (moosefs.metrics.performance_metrics.RegressionMetric method) _calculate_means() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline static method) _compute_merging() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _compute_metrics() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _compute_pareto() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline static method) _compute_performance_metrics() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _compute_subset() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _dominate_count() (moosefs.core.pareto.ParetoAnalysis method) _drop_columns() (moosefs.core.data_processor.DataProcessor method) _drop_missing_values() (moosefs.core.data_processor.DataProcessor method) _effective_n_jobs() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _encode_categorical_variables() (moosefs.core.data_processor.DataProcessor method) _extract_repeat_metrics() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _fill_nan() (moosefs.core.data_processor.DataProcessor method)

_filtered_time_dataset() (moosefs.core.data_processor.DataProcessor method) _generate_subgroup_names() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _initialize_models() (moosefs.metrics.performance_metrics.Accuracy method) (moosefs.metrics.performance_metrics.BaseMetric method) (moosefs.metrics.performance_metrics.ClassificationMetric method) (moosefs.metrics.performance_metrics.F1Score method) (moosefs.metrics.performance_metrics.LogLoss method) (moosefs.metrics.performance_metrics.MeanAbsoluteError method) (moosefs.metrics.performance_metrics.MeanSquaredError method) (moosefs.metrics.performance_metrics.PrecisionScore method) (moosefs.metrics.performance_metrics.R2Score method) (moosefs.metrics.performance_metrics.RecallScore method) (moosefs.metrics.performance_metrics.RegressionMetric method) _is_dominated_count() (moosefs.core.pareto.ParetoAnalysis method) _jaccard() (in module moosefs.metrics.stability_metrics) _load_class() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _load_data() (moosefs.core.data_processor.DataProcessor method) _merge_data_and_metadata() (moosefs.core.data_processor.DataProcessor method) _merge_group_features() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _metric_func() (moosefs.metrics.performance_metrics.Accuracy method) (moosefs.metrics.performance_metrics.ClassificationMetric method) (moosefs.metrics.performance_metrics.F1Score method) (moosefs.metrics.performance_metrics.LogLoss method) (moosefs.metrics.performance_metrics.MeanAbsoluteError method) (moosefs.metrics.performance_metrics.MeanSquaredError method) (moosefs.metrics.performance_metrics.PrecisionScore method) (moosefs.metrics.performance_metrics.R2Score method) (moosefs.metrics.performance_metrics.RecallScore method) (moosefs.metrics.performance_metrics.RegressionMetric method) _num_metrics_total() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _per_repeat_seed() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _pipeline_run_for_repeat() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _rename_target_column() (moosefs.core.data_processor.DataProcessor method) _replace_none() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _scale_numerical_features() (moosefs.core.data_processor.DataProcessor method) _set_seed() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline static method) _split_data() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method) _validate_input() (moosefs.merging_strategies.arithmetic_mean_merger.ArithmeticMeanMerger method) (moosefs.merging_strategies.base_merger.MergingStrategy method) (moosefs.merging_strategies.borda_merger.BordaMerger method) (moosefs.merging_strategies.consensus_merger.ConsensusMerger method) (moosefs.merging_strategies.l2_norm_merger.L2NormMerger method) (moosefs.merging_strategies.union_of_intersections_merger.UnionOfIntersectionsMerger method) _validate_inputs() (moosefs.core.novovicova.StabilityNovovicova static method) _validate_task() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline static method)

A

Accuracy (class in moosefs.metrics.performance_metrics)

ArithmeticMeanMerger (class in moosefs.merging_strategies.arithmetic_mean_merger)

B

BaseMetric (class in moosefs.metrics.performance_metrics)

BordaMerger (class in moosefs.merging_strategies.borda_merger)

C

ClassificationMetric (class in moosefs.metrics.performance_metrics) compute() (moosefs.metrics.performance_metrics.Accuracy method) (moosefs.metrics.performance_metrics.BaseMetric method) (moosefs.metrics.performance_metrics.ClassificationMetric method) (moosefs.metrics.performance_metrics.F1Score method) (moosefs.metrics.performance_metrics.LogLoss method) (moosefs.metrics.performance_metrics.MeanAbsoluteError method) (moosefs.metrics.performance_metrics.MeanSquaredError method) (moosefs.metrics.performance_metrics.PrecisionScore method) (moosefs.metrics.performance_metrics.R2Score method) (moosefs.metrics.performance_metrics.RecallScore method) (moosefs.metrics.performance_metrics.RegressionMetric method)

compute_scores() (moosefs.feature_selectors.base_selector.FeatureSelector method) (moosefs.feature_selectors.elastic_net_selector.ElasticNetSelector method) (moosefs.feature_selectors.f_statistic_selector.FStatisticSelector method) (moosefs.feature_selectors.lasso_selector.LassoSelector method) (moosefs.feature_selectors.mrmr_selector.MRMRSelector method) (moosefs.feature_selectors.mutual_info_selector.MutualInfoSelector method) (moosefs.feature_selectors.random_forest_selector.RandomForestSelector method) (moosefs.feature_selectors.svm_selector.SVMSelector method) (moosefs.feature_selectors.variance_selectors.VarianceSelector method) (moosefs.feature_selectors.xgboost_selector.XGBoostSelector method) compute_stability() (moosefs.core.novovicova.StabilityNovovicova method) compute_stability_metrics() (in module moosefs.metrics.stability_metrics) ConsensusMerger (class in moosefs.merging_strategies.consensus_merger)

D

DataProcessor (class in moosefs.core.data_processor)

diversity_agreement() (in module moosefs.metrics.stability_metrics)

E

ElasticNetSelector (class in moosefs.feature_selectors.elastic_net_selector)

F

F1Score (class in moosefs.metrics.performance_metrics) Feature (class in moosefs.core.feature) FeatureSelectionPipeline (class in moosefs.feature_selection_pipeline)

FeatureSelector (class in moosefs.feature_selectors.base_selector) flatten_time() (moosefs.core.data_processor.DataProcessor method) FStatisticSelector (class in moosefs.feature_selectors.f_statistic_selector)

G

get_label_mapping() (moosefs.core.data_processor.DataProcessor method)

get_results() (moosefs.core.pareto.ParetoAnalysis method)

I

is_rank_based() (moosefs.merging_strategies.arithmetic_mean_merger.ArithmeticMeanMerger method) (moosefs.merging_strategies.base_merger.MergingStrategy method) (moosefs.merging_strategies.borda_merger.BordaMerger method) (moosefs.merging_strategies.consensus_merger.ConsensusMerger method) (moosefs.merging_strategies.l2_norm_merger.L2NormMerger method) (moosefs.merging_strategies.union_of_intersections_merger.UnionOfIntersectionsMerger method)

is_set_based() (moosefs.merging_strategies.arithmetic_mean_merger.ArithmeticMeanMerger method) (moosefs.merging_strategies.base_merger.MergingStrategy method) (moosefs.merging_strategies.borda_merger.BordaMerger method) (moosefs.merging_strategies.consensus_merger.ConsensusMerger method) (moosefs.merging_strategies.l2_norm_merger.L2NormMerger method) (moosefs.merging_strategies.union_of_intersections_merger.UnionOfIntersectionsMerger method)

L

L2NormMerger (class in moosefs.merging_strategies.l2_norm_merger)

LassoSelector (class in moosefs.feature_selectors.lasso_selector) LogLoss (class in moosefs.metrics.performance_metrics)

M

MeanAbsoluteError (class in moosefs.metrics.performance_metrics) MeanSquaredError (class in moosefs.metrics.performance_metrics) merge() (moosefs.merging_strategies.arithmetic_mean_merger.ArithmeticMeanMerger method) (moosefs.merging_strategies.base_merger.MergingStrategy method) (moosefs.merging_strategies.borda_merger.BordaMerger method) (moosefs.merging_strategies.consensus_merger.ConsensusMerger method) (moosefs.merging_strategies.l2_norm_merger.L2NormMerger method) (moosefs.merging_strategies.union_of_intersections_merger.UnionOfIntersectionsMerger method) MergingStrategy (class in moosefs.merging_strategies.base_merger) module moosefs.core.data_processor moosefs.core.feature moosefs.core.novovicova moosefs.core.pareto moosefs.feature_selection_pipeline moosefs.feature_selectors.base_selector moosefs.feature_selectors.default_variance moosefs.feature_selectors.elastic_net_selector moosefs.feature_selectors.f_statistic_selector moosefs.feature_selectors.lasso_selector moosefs.feature_selectors.mrmr_selector moosefs.feature_selectors.mutual_info_selector moosefs.feature_selectors.random_forest_selector moosefs.feature_selectors.svm_selector moosefs.feature_selectors.variance_selectors moosefs.feature_selectors.xgboost_selector moosefs.merging_strategies.arithmetic_mean_merger moosefs.merging_strategies.base_merger moosefs.merging_strategies.borda_merger moosefs.merging_strategies.consensus_merger moosefs.merging_strategies.l2_norm_merger moosefs.merging_strategies.union_of_intersections_merger moosefs.metrics.performance_metrics moosefs.metrics.stability_metrics moosefs.core.data_processor module moosefs.core.feature module moosefs.core.novovicova module moosefs.core.pareto module

moosefs.feature_selection_pipeline module moosefs.feature_selectors.base_selector module moosefs.feature_selectors.default_variance module moosefs.feature_selectors.elastic_net_selector module moosefs.feature_selectors.f_statistic_selector module moosefs.feature_selectors.lasso_selector module moosefs.feature_selectors.mrmr_selector module moosefs.feature_selectors.mutual_info_selector module moosefs.feature_selectors.random_forest_selector module moosefs.feature_selectors.svm_selector module moosefs.feature_selectors.variance_selectors module moosefs.feature_selectors.xgboost_selector module moosefs.merging_strategies.arithmetic_mean_merger module moosefs.merging_strategies.base_merger module moosefs.merging_strategies.borda_merger module moosefs.merging_strategies.consensus_merger module moosefs.merging_strategies.l2_norm_merger module moosefs.merging_strategies.union_of_intersections_merger module moosefs.metrics.performance_metrics module moosefs.metrics.stability_metrics module MRMRSelector (class in moosefs.feature_selectors.mrmr_selector) MutualInfoSelector (class in moosefs.feature_selectors.mutual_info_selector)

N

name (moosefs.feature_selectors.elastic_net_selector.ElasticNetSelector attribute) (moosefs.feature_selectors.f_statistic_selector.FStatisticSelector attribute) (moosefs.feature_selectors.lasso_selector.LassoSelector attribute) (moosefs.feature_selectors.mrmr_selector.MRMRSelector attribute) (moosefs.feature_selectors.mutual_info_selector.MutualInfoSelector attribute) (moosefs.feature_selectors.random_forest_selector.RandomForestSelector attribute) (moosefs.feature_selectors.svm_selector.SVMSelector attribute) (moosefs.feature_selectors.variance_selectors.VarianceSelector attribute) (moosefs.feature_selectors.xgboost_selector.XGBoostSelector attribute) (moosefs.merging_strategies.arithmetic_mean_merger.ArithmeticMeanMerger attribute) (moosefs.merging_strategies.borda_merger.BordaMerger attribute) (moosefs.merging_strategies.l2_norm_merger.L2NormMerger attribute) (moosefs.merging_strategies.union_of_intersections_merger.UnionOfIntersectionsMerger attribute)

P

ParetoAnalysis (class in moosefs.core.pareto)

PrecisionScore (class in moosefs.metrics.performance_metrics) preprocess_data() (moosefs.core.data_processor.DataProcessor method)

R

R2Score (class in moosefs.metrics.performance_metrics) RandomForestSelector (class in moosefs.feature_selectors.random_forest_selector)

RecallScore (class in moosefs.metrics.performance_metrics) RegressionMetric (class in moosefs.metrics.performance_metrics) run() (moosefs.feature_selection_pipeline.FeatureSelectionPipeline method)

S

select_features() (moosefs.feature_selectors.base_selector.FeatureSelector method) (moosefs.feature_selectors.elastic_net_selector.ElasticNetSelector method) (moosefs.feature_selectors.f_statistic_selector.FStatisticSelector method) (moosefs.feature_selectors.lasso_selector.LassoSelector method) (moosefs.feature_selectors.mrmr_selector.MRMRSelector method) (moosefs.feature_selectors.mutual_info_selector.MutualInfoSelector method) (moosefs.feature_selectors.random_forest_selector.RandomForestSelector method) (moosefs.feature_selectors.svm_selector.SVMSelector method) (moosefs.feature_selectors.variance_selectors.VarianceSelector method) (moosefs.feature_selectors.xgboost_selector.XGBoostSelector method)

set_score() (moosefs.core.feature.Feature method) set_selected() (moosefs.core.feature.Feature method) StabilityNovovicova (class in moosefs.core.novovicova) SVMSelector (class in moosefs.feature_selectors.svm_selector)

T

train_and_predict() (moosefs.metrics.performance_metrics.Accuracy method) (moosefs.metrics.performance_metrics.BaseMetric method) (moosefs.metrics.performance_metrics.ClassificationMetric method) (moosefs.metrics.performance_metrics.F1Score method) (moosefs.metrics.performance_metrics.LogLoss method) (moosefs.metrics.performance_metrics.MeanAbsoluteError method) (moosefs.metrics.performance_metrics.MeanSquaredError method) (moosefs.metrics.performance_metrics.PrecisionScore method) (moosefs.metrics.performance_metrics.R2Score method) (moosefs.metrics.performance_metrics.RecallScore method) (moosefs.metrics.performance_metrics.RegressionMetric method)

U

UnionOfIntersectionsMerger (class in moosefs.merging_strategies.union_of_intersections_merger)

V

variance_selector_default() (in module moosefs.feature_selectors.default_variance)

VarianceSelector (class in moosefs.feature_selectors.variance_selectors)

X

XGBoostSelector (class in moosefs.feature_selectors.xgboost_selector)